Dragon-in-Chief

The Dragon-in-Chief serves as the de-facto Big Bad of the story. Though he's nominally subordinate to the "real" Big Bad, he's just so much smarter, stronger or skillful (and almost always scarier) that it's clear who's really the bigger menace. He tends to have almost no respect for the Big Bad due to their comparative lack of vision, courage or common sense. The Big Bad, for his part, either seriously or fatally overestimates The Dragon's loyalty, or is just too afraid of him to be able to do much. In a nutshell, the Dragon-in-Chief is the main villainous driving force behind the plot, even if he or she did not initiate it.

The defining feature of a Dragon-in-Chief is that the Big Bad's plans completely fall apart without them; essentially, the main story ends with the Dragon's defeat. The Hero turns out to be way too much for the Big Bad to handle, and The Dragon is really the only significant threat in his arsenal. Typically, he and The Hero come from the same place, the same (usually violent) world and not the kind of environment in which the Big Bad normally operates. The Dragon and The Hero may have heard of each other by reputation, brewing a rivalry between the two. Alternatively, The Hero might have been after The Dragon to begin with, such as for revenge for a past misdeed. In either case while the Big Bad might stake all his fortune and dreams in the outcome of the fight, The Dragon and The Hero see the Big Bad as nothing more than an annoyance who should stay out of the way. Often the Big Bad's only hope of survival is that these two destroy each other.

Because of their disrespect, there are few straight Dragons amongst Dragons-in-Chief: They are either a Dragon With an Agenda, a more dangerous Starscream, or just a more inevitable Dragon Ascendant (and don't be surprised if they are Dragon Their Feet). The Dragon With an Agenda type will probably be using the Big Bad for his own ends, working as a mercenary to fund his own projects that usually turn out to be much more threatening (or interesting) than the Big Bad's goal.

If one of the other kinds, then they will probably be complaining about how the Big Bad runs things -- typically, they think the Big Bad either lacks ambition, or is just an idiot. These ones are often junior partners in the Big Bad's business: After years of hard (but fun) living as a dangerous felon, he has found himself steady employment with the Big Bad and hopes to take over the business some day or retire on the fortune made from his latest Master Plan. This is when he starts to complain about his unambitious or just plain incompetent way of running things, though the Big Bad might retort that his way is from experience and The Dragon's ways will ultimately lead to ruin. Occasionally, their warnings turn out to be right.

The most important thing is that the Big Bad is just not a significant factor if The Dragon is gone. This Big Bad must be much more manageable and less dangerous than their underling, or less likely to make a splash. The Dragon-in-Chief is either the main villain or the star of the show in his own right, and the actual Big Bad ends up relegated to supporting villain status. The Dragon can became the real Big Bad, while the theoretical Big Bad, would be moved to the position of the Evil Genius.

When a character fills this role because the Big Bad is merely absent from the main story (or simply not as important to the main character), then they are The Heavy, possibly to a Bigger Bad. See also Hypercompetent Sidekick, Supporting Protagonist and especially Non-Action Big Bad, for whom Dragons-in-Chief (sometimes) work. Compare/Contrast Deceptive Disciple.

No Real Life Examples Please

Anime & Manga

 * Zabuza from Naruto is this to Gatou. Gatou may be a billionaire shipping magnate and crime lord, but he stands no chance of defeating Team Kakashi without this Badass missing-nin.
 * Haku is actually this to Zabuza - He himself has admitted that Haku is actually more powerful that him.
 * Chigusa in Mahou Sensei Negima has been implied to have been a simple pawn; even her actual dragon was defeated by an overpowered Vampire arriving on scene. The arc was effectively over with the defeat of Fate Averruncus.
 * A lesser example is shown later with
 * This is common in Dragonball Z:
 * Majin Buu is more or less this to Babidi; though in a subversion, since he starts out as an overgrown baby, Buu takes a while to realize how little power Babidi has. Majin Vegeta might also counts, and he does realize that Babidi is inferior.
 * Dr. Gero is inferior to (and killed by) his android creations, though his Dragon Cell never meets him, as Gero dies before he wakes up. Cell expresses admiration for Gero for being so smart as to create him, but it's reasonable to assume that, if Gero were alive, that would probably not have saved him.
 * In the Red Ribbon Army, there's Officer Black, who is much more competent and threatening than Supreme Commander Red.
 * For most of his first appearance, Broly is under mind control from his much weaker father Paragus, who led the Z Fighters to the planet to fight his son. When Broly is freed, he quickly disposes of him.
 * In One Piece, Rob Lucci is the Dragon in Chief to Spandam, since despite being leader of the CP 9 Spandam is vastly inferior to Lucci (not to mention the rest of his team), and it is Lucci that Luffy ultimately has to defeat to secure a proper victory.
 * Eric the Whirlwind serves this role for Commodore Nelson Royal, as well as being a Starscream. Nelson Royal is an extremely fat man who can't even walk anymore - though apparently he's at least reasonably competent at naval warfare, and hires Eric the Whirlwind to do his dirty work, since they share the same goal. By the end, Eric
 * One could argue that Admiral Akainu is this. Though he's considered the main antagonist of the Marineford Arc, he was still under Sengoku's orders. Nevertheless, he causes the most damage to Whitebeard and his allies, from deceiving Squad, to.
 * During the beginning of the series, several people in-universe thought that Zoro was Luffy's Lancer-in-Chief, not knowing how powerful Luffy actually was.
 * Younger Toguro from Yu Yu Hakusho is the man who drives the plot and everything behind the whole Dark Tournament saga, but he is in all reality just the unstoppable muscle of Sayko. Even Sayko admits it, as his ultimate goals are almost completely unrelated to the main character conflicts.
 * Sailor Moon has a few:
 * Sailor Moon R: Wiseman, Prince Diamond's Dragon, was actually the Man Behind the Man. Oh, and he's an Omnicidal Eldritch Abomination too.
 * Sailor Moon S: Pharaoh 90, despite being an Eldritch Abomination, is completely helpless until its Dragons Professor Tomoe and Mistress 9 free him. Actually both Tomoe and Mistress 9 also count: Tomoe lacks any combat skills, and going One Winged Angel in the Season Finale (with Awesomeness By Analysis no less!) didn't even slow Uranus and Neptune down. Mistress 9 (before she's Powered By a Forsaken Child) can't even control the host body of an Ill Girl.
 * In Rurouni Kenshin, it seemed that Shinomori Aoshi was this; once Kenshin arrived on the scene, he began openly disrespecting Kanryuu, the real Big Bad. He proves to be Kenshin's biggest challenge and nearly kills him. However, Kanryuu manages to get ahold of a gatling gun...
 * Amshel of Blood Plus is the de facto leader of Diva's Chevaliers, and he's the one who engineered the events which allowed Diva to become a threat in the first place. He's smarter, more ambitious, and more level-headed than Diva is. But being a Chevalier, he doesn't have the kind of unique, raw ability that Diva possesses, so he puts up a facade of subservience while manipulating Diva and his fellow Chevaliers into getting him what he wants.
 * By the time Mobile Suit Gundam has gotten started, Gihren Zabi has pretty much usurped control of Zeon from his father, Degwin. He's isolated his father from the people, cut him out of the running of the war, and turned him into little more than a figurehead. When Gihren decides he doesn't need him anymore, Degwin dies a horrible death by Wave Motion Gun.
 * Soukou no Strain has Ralph Werec, the protagonist's once-idolized brother and the best pilot either side of the war has ever had, and Vivian Medlock, the immediate superior he's basically got around his finger. Care to guess which one leads the final battle and which one gets screwed over?

Comics

 * The Red Skull was this to Hitler towards the end of the Reich.
 * Hermann von Klempt provides an interesting variation on this in Hellboy: Conqueror Worm. While he's still totally under the control of Rasputin, whom he believes to be the Angel of Death, and is following the latter's gameplan to the letter, he is still the de facto Big Bad of the story. This is due to Rasputin having been reduced to an impotent ghost; when Von Klempt is slain, he can't step in and fix things. The heroes actually believe Von Klempt to be the Big Bad, and never find out about Rasputin's involvement.
 * Terra was this to Slade in the Teen Titans "The Judas Contract" story. Slade barely had to lift a finger while Terra did most of the work bringing down the Titans. The moment she turned against him, he knew his plan was totally screwed.
 * Sin City dragons tend to be more physically capable than the Big Bads. Manute, for instance, was Ava Lord's dragon. Ava was only dangerous if you were a man who didn't know she was untrustworthy. Manute, on the other hand, is so dangerous that he has been the recurring villain of the series... a rarity.
 * Lord Hebi (a giant snake!) fills this role in ''Usagi Yojimbo."
 * Thulandra Thuu in King Conan, as the advisor of King Numidides.

Fan Works

 * The Big Bad of Ebony Darkness Dementia Raven Way vs. Canon is, of course, Tara Gilesbe, but Jenny is far smarter and far more dangerous than Tara can ever hope to be.

Films -- Live-Action

 * The titular character of The Man With the Golden Gun from James Bond, Francisco Scaramanga. He's the world's premier assassin but in the film he has started to work with Corrupt Corporate Executive Hai Fat in their plot to sell stolen solar tech. He's obsessed with 007 and thrilled when their paths cross (since he hopes to duel him to the death), but gets tired of Hai Fat, who freely admits to being out of his league with the secret agent. Ultimately he kills Fat and steals the tech (and his company), only to be unceremoniously shot by Bond by the end of the film.
 * Frank from Once Upon a Time In The West may be the Ur Example. He's a cold blooded killer who is now working as muscle for a crooked (literally - he's handicapped) railroad mogul who has a dream of expanding out West (so he can see it) - the violent Frank makes it clear to his face he wants to take over the business and doesn't care about his bosses' dreams. Their plans hit a snag when they have to get rid of a widow with land and a house in the way of the track. She is defended by a mysterious harmonica playing cowboy who, it turns out, is really after Frank. Cue epic western masterpiece.
 * Subverted somewhat though, in that the Big Bad is able to.
 * In Scarface, Tony Montana briefly acts as this to small time drug lord Frank. Tony wants to change supplier and expand the business; Frank thinks small is safe and warns Tony that ambitious guys in their trade tend to meet bad ends. When Tony sets up his own operation Frank sends guys to kill him - it doesn't work out, and Tony lets him know how he feels about things like that.
 * The Joker in The Dark Knight offers to work as The Dragon for the mob to take out Batman, but he really wants to use their money to bring chaos to the streets and become Batman's archenemy. He doesn't think highly of the mob and believes the city deserves a better class of criminal... so he takes over. In a decidedly hostile way.
 * In the Martin Lawrence film The Black Knight, Percival (played by Vincent Regan) is this. He's basically the only one who distrusts The Hero early on (King Leo trusts him completely), and he's the final enemy who's defeated at the end of the movie..
 * Bill "The Butcher" Cutting from Gangs of New York works as The Dragon for Tammany Hall's Boss Tweed, but that doesn't mean their views don't clash. The Butcher doesn't much like that Tweed keeps wanting to bring in these "foreign hordes" of Irish workers, while Tweed thinks Cutting's semi-racist views are outdated. But while Tweed might be the Mayor, it is Cutting who runs the gangs and therefore Cutting who has the monopoly on violence. As Hero Amsterdam is on a mission of vengeance against the Butcher and since Tweed is merely corrupt, and not murderous, Cutting serves as the main villain of the story. The cagey Tweed manages to outlive him and survives the film.
 * Hitman Benedict in Last Action Hero is this to mob boss Tony Vivaldi. He hates his boss for his stupidity and especially for his idiotic quips, which often make no sense. Benedict kills him halfway through after his bosses plan fails (which he blames entirely on Vivaldi) and uses the magic ticket to start an inter-dimensional crime spree.
 * Though Parker Selfridge is the nominal leader of the human forces in Avatar, the main antagonist of the film is Colonel Quaritch, who runs his mercenary army exactly how he wants to and ultimately becomes the real power in the operation -- and it's clear they both know it. About the only things that keep Selfridge in place are the fact that he's paying, and that Quaritch can't be bothered with the administrative details. At the end of the movie,.
 * A deleted scene made this explicit. In it, Selfridge threatens to terminate Quaritch with a phone call to Earth. Quaritch, who is much larger than Selfridge, grabs his nominal superior and points out that Earth is very long way away. The scene was probably cut from theatrical because this dynamic was already extremely obvious.
 * Word of God is that Darth Vader was intended to be this early on (possibly sharing the spot with other Imperial officers). Traces of this remain as late in the game as the A New Hope novelization, which describes The Emperor as a weak-willed man controlled by ambitious underlings. The actual movies as released, however, make it plain that while Vader is incredibly powerful and evil, the Emperor is worse on every imaginable scale.
 * Even if the Emperor's much greater power makes him a Bigger Bad instead of Vader a Dragon in Chief, Vader certainly qualifies in A New Hope -- he's subservient to Tarkin, who's much less intimidating than the Sith Lord.
 * Though it is clearly understood that the only reason Vader is not the Dragon in Chief is because of his physical state. Both Vader and Palpatine know that were Vader not limited by his cyborg body, he could (and would) easily overthrow his master.
 * Um I'm pretty sure he still does
 * Darths and Droids restores Vader to this position by making the Emperor a scheming and ambitious but ultimately timid old man who has been manipulated by Vader along with the Jedi Council.
 * In Iron Man 2 Ivan Vanko is recruited by Justin Hammer's as the only one who knows how to mimic Tony Stark's Iron Man tech. But he constantly berates Hammer for the quality of his Iron Man knockoffs and at the end of the film.
 * Simon Phoenix is this in Demolition Man, until he's finally had enough of Dr. Cocteau. While Cocteau is Genre Savvy enough to program Phoenix to be unable to kill him, he neglects to do this for the other criminals Phoenix has released. Oops.
 * Davy Jones became this in part 3 of the Pirates of the Caribbean trilogy to Lord Beckett. He had formerly been the Big Bad in part 2, but was forced into servitude due to Beckett's leverage (Jones' Cursed Heart). In the final battle, Jones seizes his opportunity to regain control of his ship, where he promptly
 * It is actually sort of a subversion. Beckett was way more evil than Davy Jones. Davy Jones was possibly more dangerous, however he is a Woobie Destroyer of Worlds. Beckett is a Complete Monster.
 * Beckett is a Pragmatic Villain. The only reason he wants to kill all pirates is to make shipping safe for the East India Company, summarized by his oft-cited phrase "It's just good business". He has no personal dislike of pirates (except, possibly, Jack Sparrow with whom he had dealings in the past). He's clearly displeased with Jones obliterating pirate ships instead of boarding them, as dead pirates can't talk or be publically executed. Hell, in the second movie, he lets Elizabeth go free, knowing full well he's holding all the cards. He's not even particularly worried about Elizabeth pointing a gun at his head. He restored Norrington's status (and gives him a promotion) not only because he got the Heart, but also because Norrington is a competent naval officer with years of experience, who understands the chain of command. He also doesn't want a fair fight with the pirates (then again, pirates don't fight fair). He wants to win and crush them in one fell swoop. That's why he brings an entire armada (and the Flying Dutchman) to the final battle.
 * Alexander Minion in the first Spy Kids movie.
 * Nigel from Rio. While his owner still drives the plot to some degree, Nigel is the more direct threat and far more menicing and evil than the poacher he's working for.
 * A bizarre chain-Dragon-in-Chief scenario appears in the awful Dungeons and Dragons and its vastly-superior-but-still-awful sequel, Wrath of the Dragon God. In the first film, Profion is utterly useless by himself, and relies on Damodar to do everything for him. At the beginning of the sequel, Profion is dead and Damodar has ascended to the mantle of Big Bad - whereupon he, too becomes completely impotent, and has to rely on the lich Klaxx the Malign to do everything for him. This is hilariously lampshaded near the end, when Damodar tells Klaxx to kill the onrushing hero. Klaxx Deadpan Snarkers back, "Kill him yourself, O great and powerful Damodar," and flies away. Damodar, being wimpy but Genre Savvy, flees for dear life.

Literature

 * Arguably Martel from The Elenium. Though the Big Bad, Azash, is far more powerful, he's too much of an Eldritch Abomination to understand humans well enough to effectively plot against them, and his high priest is, to put it bluntly, an idiot. As a result, Martel's scheming drives the vast majority of the plot, while at the same time he is the hero's rival, Worthy Opponent, and Shadow Archetype. He definitely fits this role in relation to Primate Annias, as it's made quite clear that Annias's drive for power would go nowhere without Martel's resources, skills and brains to back it up.
 * In The Malloreon by the same author, Nahaz is Dragon in Chief to both Urvon, who is completely insane, and his Bastard Understudy, Harakan, an Evil Sorceror who needs Nahaz's Demons to both do his fighting, and help him maintain his Mengha persona in front of the Demon-worshipping Karandese. Without Nahaz, both their plans would quickly fall apart, and it's worth noting that he both outlives Harakan (who originally summoned him) and dies in the exact same moment as Urvon, who he drags into hell with him. No one who has read this will be surprised to learn that Nahaz has his own agenda, which would more or less have resulted in the end of the world if successful.
 * Ghend is this in The Redemption of Althalus, as his boss, Daeva, is never encountered, due to rules against the gods interfering personally in human affairs. As a result, it's Ghend who drives the plot, and the story ends with his defeat.
 * Metatron to the Authority in His Dark Materials.
 * The ogre Grand Lord Golgren from the Dragonlance Minotaur Wars and Ogre Titans trilogies is this to the Ogre Grand Khan, being much smarter and more charismatic than his boss and being capable of overthrowing him at any time, only keeping him around because he likes the perks his current job has..
 * In The Dresden Files, Lara Raith appears to be this to the world at large after
 * In the Forgotten Realms Hunter's Blade series, Obould and Gerti are the dragons working for the very manipulative band of drow that set the whole plot into motion. However, Obould takes a level in badass and very quickly takes charge of the situation. Three of the four drow think they've still got control of the situation, but after Obould puts Gerti in her place, there's little room for debate about who's running the show.
 * In Animorphs, even before his promotion to Visser One, Esplin 9466 AKA Visser Three serves as by far the most horrifying and powerful of the Yeerks. For a significant portion of the series however, he is outranked by the original Visser One. The series is roughly half over before he is assigned full control over the invasion of Earth and he does not become Visser One until the final installments.
 * Renegade Russian Colonel Yegor Viktorvich Zakharov from Dale Brown's Act of War, who acts as the head of operations for the GAMMA eco-terrorist group. While Ruiz recognises his military talent,
 * In Dune, Baron Harkonnen is far more dangerous than The Emperor, though the Emperor is quite formidable himself and would be able to pose a major threat to our heroes without Harkonnen cooperation. Still, it's the Baron who fills the antagonist role, while answering to the Emperor, at least for appearances' sake.
 * It's a little more complicated. Both houses officially answer to the emperor making him the Combat Referee. The Emperor changes into a bad guy upon becoming convinced that the Artreides were becoming to powerful.
 * In Warrior Cats, Big Bad Tigerstar's son Hawkfrost serves as the main villain for the New Prophecy arc. However, unlike usual, Tigerstar is every bit as powerful and cunning as Hawkfrost, but is severely hampered by the fact that
 * In Septimus Heap,
 * In Death series: Ceremony In Death introduces Selina Cross as the Big Bad and Alban as The Dragon with a cult of Satanists..

Live-Action TV

 * In the Law and Order Criminal Intent episode "Cuba Libre", Joel Grey plays a Badass Senior who is definitely a Magnificent Bastard and openly defies Det. Goren in his role as the Big Bad... until Goren does some psych profiling and discovers that the evil gang leader Joel's character has been relying on to carry out his hits is really The Chessmaster, and has been using him in an elaborate scheme to get out of jail. Goren cracks the case by getting the two to turn on each other, after telling him how the gang leader imagined the feisty old man as a puppet, sitting on his knee.
 * From seasons 1-3 of The Wire, Stringer Bell. Stringer is technically second-in-command to Avon Barksdale (in their drug-trafficking operation) but is the brains and muscle of the organization. During Avon's incarceration, Stringer takes full control of all operations, and even orders the secret murder of.
 * For Power Rangers in Space, Astronema takes on this role in the grand scheme of things. She is the strongest foe in Dark Spector inventory but secretly plots against him behind his back, and she would have been the one to kill him if Darkonda didn't beat her to it. And ultimately the heroes never face Dark Spector directly, and Astronema remains their primary enemy to defeat by the end.
 * Chuck:
 * In Fringe Season 1, Nina Sharp is set up as this to William Bell.
 * Gatehouse from The Shadow Line. While he's technically subordinate to the leaders of Counterpoint, he's the driving force of much of the plot, and he's undoubtedly the main antagonist.
 * In Smallville's fifth season, Brainiac is this to Sealed Evil in A Can General Zod.
 * That makes Brainiac The Heavy, not this trope.
 * Wrath of the Dragon God. See above in "Film."
 * Rumplestitskin / Mr. Gold in Once Upon a Time Technically, Mayor Mills rules over Storybrooke with an iron fist, but he's the Bad Samaritan with a Chain of Deals that has everyone in his back pocket, mayor included.

Video Games

 * from Metal Gear Solid could be the trope example in the page description. Not only does he trick his supposed allies into believing they are in charge not one, not two, but three times, he also does it in only two games! In the third game he's a Dragon With an Agenda . In the fourth game, he's takes the role of the actual Big Bad  He's not the trope creator of Chronic Backstabbing Disorder for nothing.
 * In the first game he may have genuinely wanted Liquid to succeed. He certainly did nothing to stop him, and his only "treachery" was not being there at the end (fat lot of good he would have done with, and selling the Metal Gear design to various countries after the events of the game are over, something that might actually have furthered Liquid's goal anyway. At one point he tells Snake that he greatly admires Liquid and that he is the one man who can make his dreams come true, and while he lies and says the dream is the revival of Mother Russia, he does briefly admit that his real motivations was to reignite conflict because it was the only thing that allowed humanity's emotions to be revealed, something he feels the current age was suppressing, which are actually very similar to Liquid's goals, or more specifically.
 * Liquid himself probably fits more into the trope, if only in spirit, in regards to Big Boss (even though he technically isn't Big Boss's dragon due to Big Boss being dead/in a coma during the events of the game). Although he intends to bring about Big Boss's dream, he hates Big Boss for his role in his creation, and also implies that he's really only bringing about Big Boss's goal in order to further tarnish his already soured reputation ("Now I'll finish the work that father began. I will surpass him... I will destroy him!").
 * Seemingly invoked with Final Fantasy IV, where despite Baron and the King being the enemy for the first third of the game, it's the captain of the Red Wings Golbez that everyone is worried about. However, it later turns out the King was killed and replaced by one of Golbez's minions long before he appeared on the scene, so Golbez actually was the controlling force of Baron all along.
 * Actually,.
 * Gestahl in Final Fantasy VI is The Emperor of The Empire, but it's Kefka, his court mage, who leads the Imperial forces in most every run-in you have with them. He goes on to.
 * In Final Fantasy X, though it turns out, before and after this it's Seymour who serves as the game's main villain besides Sin. Sin itself is also this in a way, being the beast the game centers around before The Reveal that Sin (or rather, the current incarnation of Sin) is just
 * Final Fantasy XII, Emperor Gramis is the leader of the Arcadians, but everyone is worried about Vayne, Gramis' son and a ruthless, power-hungry politician that has everyone worried about another war. He eventually.
 * Pious Augustus in Eternal Darkness:Sanitys Requiem if he's working for Chattur'gha.
 * A variation occours in Mass Effect, as it is revealed later on that Saren is
 * By the time of the sequel, two years of 'verse time later, nobody believes that was in charge. Everybody's back to blaming Saren for everything, not seeing the threat that's staring at them.
 * This is taken Up to Eleven in the infamous Mind Screw ending of Mass Effect 3: What.
 * In Resident Evil Umbrella Chronicles, Sergei Vladimir is the de facto Big Bad, carrying out Evil Cripple Ozwell Spencer's orders for him. When Sergei dies, Spencer is left with no allies and no support, and in the following game, is killed by Wild Card and series Big Bad Albert Wesker.
 * You as Aldo Trapani in The Godfather: The Game sit on the line between The Dragon-normal and this. While you're undeniably loyal to Michael and he's the one with the plan, he's no active gunfighter like Sonny. Since Its Up to You, his plans would surely fall apart without you to help pull triggers as needed.
 * For that matter, if you accept it as Canon, much of the actual movie couldn't have happened without you being in the right place to help out the characters.
 * The final villain of the second Ace Attorney game does not dirty his own hands, but rather, hires an assassin to carry out his murder plot.
 * In Fallout New Vegas Caesar is commonly stated to be a brilliant leader, but he is more than content to let the Legate lead the attack on Hoover Dam.
 * Justified Trope by Caesar being stated to be a brilliant leader when it comes to charisma, intelligence and generally leading a nation. Legate Lanius just happens to have a much stronger physical presence and be better at leading an army on the frontlines.
 * You can also be this, should you side with Mister House. If you end the game with Evil Karma, the ending slide even states that
 * Sindri from Dawn of War. While Lord Bale appears to know about and share his goal, it is clear that Sindri is the one in charge. He is very disrespectful of Bale, at one point even being openly annoyed at him interrupting a ceremony. Even when Bale threatens him, he just respond sarcastically. But despite all this, Bale appears to think he is the one in charge. In the end he is betrayed and left to die, while Sindri reaches his goal alone, which was clearly the plan all along.
 * This dichotomy is played up again in Dawn Of War 2: Retribution. Eliphas the Inheritor is the leader of the Chaos Warband, and sorcerous adviser Neroth (who even has the same voice actor as Sindri). In this case however, Eliphas is shown to actually be mostly competent, just occasionally more interested in self-preservation and personal power than the overall battle plan. Neroth hangs around to ensure he sticks to said plan. And when Eliphas gets too lippy, Abbadon The Despoiler psychically intrudes on their conversations to remind both of them who's really in charge.
 * In Mega Man Zero 3 Omega serves as this to Dr Weil. While Weil is FAR from helpless without him it is Omega who serves as the final boss and his defeat completely DESTROYS Weil's plot for game 3.
 * Cesare Borgia from Assassin's Creed Brotherhood. His father, Rodrigo, is the game's Big Bad, but Cesare is the most visible antagonist and the one that poses the biggest threat to the Assassins. He also believes Rodrigo lacks vision for being content with consolidating his power in Rome following his failures in the previous game, rather than proactively trying to conquer the rest of Italy.
 * The only reason he.
 * Tanya Winters and Warren Williams in Saints Row, also Chief Monroe to an Extent
 * Julius from Sword of Mana and Final Fantasy Adventure.
 * Similarly, Thanatos in Secret of Mana.
 * Primal Dialga from Pokémon Mystery Dungeon Explorers, who also happens to be a literal dragon.
 * Fire Emblem Jugdral: Prince Yurius. He's being manipulated by Manfroy and was specifically "bred" by him for his plot to resurrect the dark god. The entire point being, of course, for Yurius to eventually take his rightful place as the dark god for himself... which he does, seizing all effectual control of his kingdom and acting as the game's Final Boss.
 * Gilgamesh is arguably this in Fate Stay Night. He is vastly more powerful than Kotomine, the actual Big Bad of the Fate route, and he is by far the greater threat to the heroes. When he dies in Heaven's Feel, Kotomine lacks the capacity to carry through with his plans on his own. In Unlimited Blade Works, he becomes the Big Bad after Kotomine is killed. Atypically, Kotomine is still probably more effective as the Big Bad, because he is a cunning and ruthless planner, whereas Gilgamesh's massive ego prevents him from using his power effectively most of the time.
 * Azel from God Hand could possibly count. He's not really considered equal with the other four big bads since he's human, but he has a God Hand and really knows how to use it well. He could easily take out any of the demons whenever he wants to. Whoops.
 * Deathwing in World of Warcraft: Cataclysm. The Old Gods are the real Big Bads, but due to their imprisonment by the Titans, they can't use the bulk of their power and are mostly limited to slowly corrupting and influencing the inhabitants of Azeroth. Deathwing presents a much more immediate threat with his titular Cataclysm, and is the driving force of the expansion's plot. Unlike most examples of this trope, however, Deathwing actually is loyal to his masters.
 * Surprisingly, the Genma Triumvirate of Onimusha: Dawn of Dreams are both this and not at the same time. They fit as The Dragons of Hideyoshi, but it is clear early on that they're simply using him as a means to an end and who they're truly The Dragons to.

Web Comics

 * Order of the Stick: Within the Empire of Blood, General Tarquin holds this position: the Empress (an actual dragon) is more concerned about where her next meal is coming from.
 * Tarquin's band of six adventurers fills this in various places all over the western continent. Each of them prop up governments and switch around as the situation demands.
 * Also deconstructed in the prequel book Start of Darkness, which shows what happens when a Complete Monster is nominally subservient to a Well Intentioned Extremist. Xykon is initially The Dragon to Redcloak: despite being more brutish and less intelligent than his "boss", over the course of the story he evolves from The Dragon to Dragon in Chief to Big Bad, by virtue of his total lack of moral compunction.
 * Except, recently,, so this trope still appears to be in effect.
 * They have a complicated relationship. Note that technically, Redcloak fulfills this trope just about literally: he's the one Xykon's hobgoblin army recognizes as their leader, despite Xykon being more powerful and the de facto boss. And there are definitely hints that Redcloak will turn into The Starscream once their goals irreconcilably diverge.

Western Animation

 * In the Aladdin animated series: Haroud, Abys Mal's much smarter sidekick.
 * And in The Return of Jafar Jafar plays this an incredibly obvious version of this trope as Abys Mal's genie.
 * Shego of Kim Possible is almost this to Drakken. The only thing that stops her fulfilling all the criteria is that for most of the series, she lacks the ambition to become the bigger threat -- she (mostly) helps Drakken carry out his schemes rather than invent and execute any of her own. But we know she has the power to completely overthrow Drakken if she wants to--see A Sitch In Time.
 * What stops her is that Drakken is a significant threat in his own right, and still drives the plot of most of their stories. Without her around he's somewhat less competent, but that's just as likely to make him even more dangerous as his plans are more likely to Go Horribly Wrong (case in point, creating advanced killer robots that end up turning on him). He is smarter than Shego -- she just has a lot more common sense.
 * Some fans believed that Azula was this for her father, until Ozai's full powers were revealed later on.
 * Which would explain why Azula backstabs many people (figuratively and literally) and wants to be crowned the next Fire Lord, but never actually tries to take him on. Azula would know not to pick a fight she can't win.
 * Destro and the Baroness came off as this to Cobra Commander for much of the original series.
 * In Transformers Prime, Starscream is more or less taking on this role (in addition to the one he named). Of course, that's only because Megatron is busy . Aside from that, he is quite clearly a much bigger threat than Starscream could ever hope to be.
 * South Park, cthulhu is this to Cartman.