Grand Unifying Guesses/God

God is everywhere, so isn't it funny how you never see him in the same room as...
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 * Haruhi Suzumiya.
 * Kyon.
 * The Doctor
 * Jesus
 * But that's impossible! Jesus wears glasses and God doesn't!
 * Plus Jesus is supposed to be God's son! How can he be God as well?!
 * Yog-Sothoth, who existed before time began and exists beyond all known creation. Created Azathoth, who created our own universe by accident, making him more of a God of god(s).
 * By extension, the Dunwich Horror is Jesus (this was probably intentional).
 * Minus (OK, that one's a gimme)
 * Tommy Westphall
 * Pen-Pen
 * Shai-Hulud
 * The human model Cylons
 * Alton Brown
 * Chiyo-chichi
 * Calvin
 * The President from Deep Impact
 * Everyone from Final Fantasy VII
 * Homsar
 * Latro
 * Larry
 * Mr. Rogers
 * The Sun Baby
 * Amaterasu
 * The Cloudkeeper/Great Wishing Star
 * Mick Foley (Assuming that you do not take the argument of Foley-as-Haruhi)
 * Or that you do take it, and also the idea of Haruhi-as-Christ, and the idea of the Trinity.
 * Robin Williams
 * Kratos, though he isn't Jesus.
 * Pacifica Casull
 * Chuck Norris, duh
 * Master Hand. And, by extension, Crazy Hand.
 * Erin Esurance
 * Simo Häyhä
 * Tommy Oliver
 * Captain Falcon
 * Toph Bei Fong
 * The Queen.
 * Hikari, of course, is Jesus. By extension, Hikaru is The Antichrist.
 * Nagisa, Honoka, Saki, Mai, Michiru, Kaoru, Nozomi, Rin, Urara, Komachi, Karen, Kurumi, Love, Miki, and Inori are the Apostles. Judas's intentional betrayal is actually a heavily biased depiction of Kurumi-as-Milk's tendency to cause problems by, well, being Milk. Likewise the idea that there were only twelve apostles at any given time is due to the fact Michiru and Kaoru are often ignored by the marketing team.
 * Dr. Light
 * Godzilla
 * Orihime
 * Peter Petrelli
 * Sam and Dean Winchester
 * Susan Ivonava
 * Optimus Prime
 * Light Yagami
 * So Ryuk and Rem don't count? Besides, Light only has a God Complex; if he was really God, Ryuk or Rem would have noticed and said something.
 * Stephen Colbert
 * You and Me
 * Ourselves.
 * Mary Sue

Three Anime characters are Hindu gods.

 * Haruhi Suzumiya: Brahma, the Creator.
 * Son Goku: Vishnu, the Preserver. The whole Universe was going to die, but he managed to put a stop to it.
 * Ideon: Shiva, the Destroyer. Ideon destroyed the Universe!