Well-Intentioned Extremist/Video Games/Visual Novel


 * The Church in Tsukihime is portrayed this way. They can't go too overboard because they're supposed to be secret. The only reason they're not trying to kill Arcueid is because, well, she's essentially unkillable. They gave up. Supplementary materials indicate that they prefer the 'kill the evil non-human, burn the body, and cover up all the evidence' course of action, and ask questions only if they are unable to actually kill said non-human, as in the case with Arcueid, Ciel, or Wallachia.
 * Ace Attorney:
 * of the first game puts the extrem(e) in Well-Intentioned Extremist. Among his acts are and much more. His reasons for doing all this was to gain total control over the police force, so that criminals who were obviously guilty (such as Darke had been) would be brought to justice, no matter what.
 * Edgeworth in the first game appears at first to be an Amoral Attorney who prosecutes innocent people for the sake of his own record. However, it is eventually revealed that he honestly believed in the guilt of all the people he used illegitimate methods to try to sentence, making him this.