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- Actor Allusion: It isn't the first time Agent Clay has had contact with people with special abilities. In another life, he was one.
- Hey, It's That Guy!:
- Bill is still a "badass mutha who don't take no crap off of NOBODY!"
- Mister Nigel-Murray can watch television with his mind.
- Alternatively, "Hey, Whistler can see!"
- Dr. Lee Rosen wanted to kill Jason Bourne.
- Tamara Johansen plotted to kill a kid and make off with the ransom.
- Amanda Perry or original Audrey Parker is Dr. Rosen's daughter.
- Summer Glau.
- Burt is a crazy, Alpha evangelist.
- Alternatively, Cromartie is impersonating a crazy, Alpha evangelist.
- Data (or, more properly, Lore) is an Alpha working for Red Flag.
- Agent Clay is Richard Tyler.
- Leoben didn't manage to resurrect this time.