Well-Intentioned Extremist/Web Original

Lenny Priestly of Survival of the Fittest V3 has shown that he would do anything to get his sister off the island, including killing his classmates. May be subverted; there are some implications that he may be using her as an excuse to go on a killing spree, especially now that he's gone all Ax Crazy and lost his Anti-Villain status...
- Rachel Gettys from V4 is also one.
- Aaron. Hughes. Yes, he's trying to find a way off the island. However, his methods are rather...extreme. At one point, he flat-out acknowledges to himself that he doesn't care if his allies get killed, just if the majority of the class gets off the island. That's not getting into his Manipulative Bastard tendencies, or how, previously, he had let one of his former friends be killed just so he could portray him as a martyr to the rest of his group. Or the fact that he manipulated another character into electrocuting someone to death, simply because both characters involved were "a threat".
Dr. Horrible. At least, in the beginning, if you believe him. He tries to convince himself that this is still the case during the "Slipping" song, probably unsuccessfully.

Dr. Horrible: Then I win, then I get everything I ever/All the cash, all the fame and social change/Anarchy, that I run!

- His fish metaphor when he first speaks with Penny is another good example.
Dudley Griffin of Kate Modern is one of the few people prepared to confront the Order head on. Pity he's such a violent jerk.
The SCP Foundation, and that's putting it lightly.
- Also true with some of their rivals and enemies, including the Chaos Insurgency, Global Occult Coalition, and Church of the Broken God.
Dr. Steel wants to make the world a better place (for himself), a "Utopian Playland", by taking it over - with giant robots if necessary - and becoming World Emperor.
Brother Joseph Cross of DC Nation canon and, to a lesser extent, Clearwater Commune in general. Cross is so consumed by guilt over the war crimes he committed in Vietnam that he has put all his energy into building a sanctuary that rejects ALL forms of violence, even self-defense. Unfortunately, his unquestioned leadership has turned them into an Untrusting Community.

Brother Joseph: Y'see, these are good people who try their best to raise their children who aren't corrupted by the lust for dominance that the outside worships. But for every group of good people, there needs to be an evil man who keeps that knowledge of how tempting it can be. And I AM that evil man.

Dr. Diabolik of the Whateley Universe. He's dedicated to making humanity better, and he's found a way to 'awaken' hundreds, if not thousands, of people at a time. It involves raiding an entire medium-sized city and doing things that unfortunately cause the deaths of maybe hundreds each time. He also turns a profit on the deal, so he can afford to keep doing it.
Founder and director of Boarding School of Horrors Addergoole, Doctor Regine Avonmorea, seems to be one of these.
Lord Doom has a plan to save humanity from overpopulation, hunger, crime, war, and tyranny. His plan promotes universal literacy, tolerance for other ethnicities, political creeds, and sexual orientations, grant universal health care for all, and generally make life more pleasant for everyone, as long as you didn't mind giving up a couple of small, tiny, insignificant things in the meantime...things like a right to vote, or freedom of speech, or the right to choose your own occupation. Small things like that. Oh, and he's in charge. Forever.
Lord Vyce wanted to save the multiverse from 'The Entity', so he goes around protecting other universes by conquering and enslaving them.
In The Gmod Idiot Box, DasBoSchitt's way of defending Renamon from people who portray her in a pornographic manner is to repeatedly kill her and portray her in other ways (such as attacking Duke Nukem) to make these people hate her, and, as a result, has been repeatedly viewed as a Renamon hater, or even a furry hater.
Winged Vengeance: Not even her creator escaped her judgment.