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** What do you want them to do? Have Commander Goldman eating a bagel while reminding the captain he can't work on Saturday? For one, it can get offensive pretty easy just like my example. For two it's the 24th century. All religions that exist now still exist, but people aren't jerks about trying to force their religion's dogma on the rest of the universe anymore. Also we always see military installations, and usually when people are on duty. That's not an appropriate time to discuss religion. In fact, there have been religious humans in Trek. (a catholic in TOS, Joeseph Sisko quotes from the bible, and it's implied O'Brien's wife is a buddist, just off the top of my head) As a further note, some forms of Islam and Hinduism both forbid military service. That's one of the in-universe reasons that there are so few South Asian and Middle Eastern crew members on starships.
** It's also a documented fact that religious belief (on Earth anyway) is negatively correlated with widespread scientific understanding of the universe. Put simply, in Star Trek science has advanced to the point that many of the Earth religions relying on miracles and such are simply viewed as incompatible with what's known about reality. Most people simply don't believe in them anymore for this reason. Remember, Starfleet personnel are some of the best educated people around. Education is also negatively correlated with religious belief.
*** Not negatively enough, according to [https://web.archive.org/web/20070111214109/http://www.harrisinteractive.com/harris_poll/index.asp?pidPID=359 the Harris Poll.] Yes, there is a difference, but that still left 85% of postgraduate degree recipients having some sort of religious beliefs. Most people find their religious beliefs go just fine with their education. This troper has not found that her two science degrees have harmed her (Christian) beliefs in any way, nor do most others of her religion; it seems likely the same is true of most Muslims, Hindus, Buddhists, and other educated religious people. No, I think we can safely say this is a [[Writer on Board]] case.
*** I couldn't figure out which of the many polls listed you were referring to, but I'll take your word for it. Harris polls of Americans are just a little irrelevant because of the off the charts level of religiosity Americans demonstrate when compared to our peers. In the broader Western world, far fewer educated people believe in Christianity or other miraculous religions. Surveys of members of the Royal Academy of Sciences (UK) and the National Academy of Science (USA) show that a vast majority of the best scientists in these two countries do not believe in a god. When you consider that the humans portrayed on Star Trek would probably be the equivalent of members of the Academies, it makes perfect sense that few are religious. This troper has found that nearly all of her friends who achieve a M.S. do not remain believing Christians. Some become deists, but most become atheists or agnostics.
*** Your experience does not equal reality. Bluntly, religion is something that's not remotely disappearing. Europe had this view for a while and now seems to be uncomfortably aware it's not just the United States that seems to have an overfondness for it.
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